The Reproducibility Working Group Bibliography
The Reproducibility Working Group Bibliography
Bibliography
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ENCORE: a practical implementation to improve reproducibility and transparency of computational research
Antoine H. C. Van Kampen
,
Utkarsh Mahamune
,
Aldo Jongejan
,
Barbera D. C. Van Schaik
,
Daria Balashova
,
Danial Lashgari
,
Mia Pras-Raves
,
Eric J. M. Wever
,
Adrie D. Dane
,
Rodrigo García-Valiente
,
Perry D. Moerland
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DOI
URL
Garden of forking paths in ERP research – Effects of varying pre-processing and analysis steps in an N400 experiment
Abstract This study tackles the Garden of Forking Paths, as a challenge for replicability and reproducibility of ERP studies. Here, we …
Anđela Šoškić
,
Suzy J. Styles
,
Emily S. Kappenman
,
Vanja Ković
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DOI
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A Set of FMRI Quality Control Tools in AFNI: Systematic, in-depth, and interactive QC with afni_proc.py and more
Abstract Quality control (QC) assessment is a vital part of FMRI processing and analysis, and a typically underdiscussed aspect of …
Paul A. Taylor
,
Daniel R. Glen
,
Gang Chen
,
Robert W. Cox
,
Taylor Hanayik
,
Chris Rorden
,
Dylan M. Nielson
,
Justin K. Rajendra
,
Richard C. Reynolds
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URL
A standardized image processing and data quality platform for rodent fMRI
Abstract Functional magnetic resonance imaging in rodents holds great potential for advancing our understanding of brain networks. …
Gabriel Desrosiers-Grégoire
,
Gabriel A. Devenyi
,
Joanes Grandjean
,
M. Mallar Chakravarty
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From Maps to Models: A Survey on the Reliability of Small Studies of Task-Based fMRI
Task-based functional magnetic resonance imaging is a powerful tool for studying brain function, but neuroimaging research produces …
Patrick Sadil
,
Martin A. Lindquist
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Moving beyond processing- and analysis-related variation in resting-state functional brain imaging
Xinhui Li
,
Nathalia Bianchini Esper
,
Lei Ai
,
Steve Giavasis
,
Hecheng Jin
,
Eric Feczko
,
Ting Xu
,
Jon Clucas
,
Alexandre Franco
,
Anibal Sólon Heinsfeld
,
Azeez Adebimpe
,
Joshua T. Vogelstein
,
Chao-Gan Yan
,
Oscar Esteban
,
Russell A. Poldrack
,
Cameron Craddock
,
Damien Fair
,
Theodore Satterthwaite
,
Gregory Kiar
,
Michael P. Milham
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DOI
URL
Addressing researcher degrees of freedom through minP adjustment
Abstract When different researchers study the same research question using the same dataset they may obtain different and potentially …
Maximilian M. Mandl
,
Andrea S. Becker-Pennrich
,
Ludwig C. Hinske
,
Sabine Hoffmann
,
Anne-Laure Boulesteix
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DOI
URL
Flexible adaptation of task-positive brain networks predicts efficiency of evidence accumulation
Abstract Efficiency of evidence accumulation (EEA), an individual’s ability to selectively gather goal-relevant information to make …
Alexander Weigard
,
Mike Angstadt
,
Aman Taxali
,
Andrew Heathcote
,
Mary M. Heitzeg
,
Chandra Sripada
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DOI
URL
Garden of forking paths in ERP research – Effects of varying pre-processing and analysis steps in an N400 experiment
Abstract This study tackles the Garden of Forking Paths, as a challenge for replicability and reproducibility of ERP studies. Here, we …
Anđela Šoškić
,
Suzy J. Styles
,
Emily S. Kappenman
,
Vanja Ković
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DOI
URL
XCP-D: A Robust Pipeline for the Post-Processing of fMRI data
Abstract Functional neuroimaging is an essential tool for neuroscience research. Pre-processing pipelines produce standardized, …
Kahini Mehta
,
Taylor Salo
,
Thomas J. Madison
,
Azeez Adebimpe
,
Danielle S. Bassett
,
Max Bertolero
,
Matthew Cieslak
,
Sydney Covitz
,
Audrey Houghton
,
Arielle S. Keller
,
Jacob T. Lundquist
,
Audrey Luo
,
Oscar Miranda-Dominguez
,
Steve M. Nelson
,
Golia Shafiei
,
Sheila Shanmugan
,
Russell T. Shinohara
,
Christopher D. Smyser
,
Valerie J. Sydnor
,
Kimberly B. Weldon
,
Eric Feczko
,
Damien A. Fair
,
Theodore D. Satterthwaite
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